Computing for Biology, IBM-BNL, Blue-Gene, Science Workshop 2003

Workshop Agenda
This workshop does not have a registration fee.

Below you will find links to available workshop abstracts as well as links to relevant subject information under each talk. Additional links will be added when they become available. Some workshop abstracts may be in Portable Document Format (PDF) format.
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IBM-BNL Blue Gene Science Workshop
Brookhaven Laboratory on Long Island, New York
Date: July 31– August 1, 2003 ( workshop has ended )
Web: http://www.bnl.gov/CompBio/

Talks will take place in the Physics "Large Seminar Room" in building 510.

Directions to Workshop (marked route)
Physics - Building 510 Map (directions to seminar room)
Map of BNL Central Campus (pdf)
To print the agenda, use your browser's "print" feature.

Thursday, July 31 Day 1

8:00 am - 8:30 am 8:30 am - 8:45 am 8:45 am - 9:15 am 9:15 am - 9:45 am 9:45 am - 10:00 am 10:00 am - 10:15 am 10:15 am - 10:30 am 10:30 am - 11:15 am 11:15 am - 12:00 pm 12:00 pm - 12:45 pm 12:45 pm - 1:30 pm 1:30 pm - 1:45 pm 1:45 pm - 2:30 pm 2:30 pm - 3:15 pm 3:15 pm - 3:30 pm 3:30 pm - 4:15 pm 4:15 pm - 5:00 pm 5:30 pm 7:00 pm	Continental Breakfast Welcome and Opening Remarks Praveen Chaudhari, BNL Computing and Biology Ari Patrinos, USDOE Abstract (MS Word) Blue-Gene Overview Bill Pulleyblank, IBM Massively Parallel Computing at BNL Jim Davenport, BNL Break Protein Folding and Force Fields Bruce Berne, Columbia Univ. (Chair) High Resolution Modeling of Proteins: Force Fields, Solvation Models, Sampling Algorithms, and Validation Richard Friesner, Columbia Univ. Improved Treatment of Protein Backbone Conformational Energetics in the CHARMM All-atom Force Field Alex MacKerell, U. Maryland Elements of the Blue Gene Science Program Jed Pitera, IBM Lunch Computational Systems Biology Chris Sander, Sloan Kettering (Chair) The Virtual Cell Project Leslie Loew, U. Conn. Health Center Relevant Talk Information Perfect adaptation and receptor cross talk: some recent results in modeling bacterial chemotaxis pathway Dr. Yuhai Tu, IBM Computational Biology Center Break Space-time Computing with Calcium at Dendritic Spines Terry Sejnowski, Salk Institute Abstract and Relevant Talk Information Biochemical Computation of the Mammalian Cell Ravi Iyengar, Mount Sinai Reception and Posters Dinner (pre-registered only)



Friday, August 1 Day 2

8:00 am - 8:30 am 8:30 am - 8:45 am 8:45 am - 9:30 am 9:30 am - 10:15 am 10:15 am - 10:30 am 10:30 am - 11:15 am 11:15 am - 11:30 am 11:30 am - 12:15 pm 12:15 pm - 1:30 pm 1:30 pm - 2:15 pm 2:15 pm - 3:00 pm 3:00 pm - 3:15 pm 3:15 pm - 4:00 pm 4:00 pm	Continental Breakfast Data Mining for High Throughput Biology Gustavo Stolovitzky, IBM (Chair) Extracting Biological Information from Genome-Scale Experimental Data David Botstein, Princeton Computational Challenges for Genomic Medicine Research Pablo Tamayo, MIT Groups Website Break Computational Proteomics Mark Gerstein, Yale Relevant Information - http://pseudogene.org \| http://bioinfo.mbb.yale.edu \| http://genecensus.org Large Scale Biological Simulation Mike Pitman, IBM (Chair) G-protein Coupled Membrane Receptors in Action Klaus Gawrisch, NIH Abstract \| Affiliation Information Lunch Large Scale Molecular Dynamics Simulations of Membrane Proteins Emad Tajkhorshid, Illinois Abstract \| Relevant Research Information Simulation of Fusion and Protein Translacation in Cell Membranes Richard Pastor, FDA Break Wrap up Sundown

Workshop Agenda This workshop does not have a registration fee.

Workshop Agenda
This workshop does not have a registration fee.