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Publications - 2005
Bennett, R. and McGuigan, M. Parallel Heisenberg spin model performance
on supercomputer architectures. ACM 2006 Symposium on Principles and
Practice of Parallel Programming, September 2005, submitted.
Bennett, R. and D’Imperio, N.L. Performance evaluation of a 3D
electrodynamics simulation on massively parallel computers. Submitted, 2005.
Benveniste, H., BlackLand, S.J., Ma, Y., Hof, P., Bennett, R., McGuigan, M.,
and Slatest, L. A three-dimensional digital Atlas database of the adult
C57BL/6J mouse brain by magnetic resonance microscopy. Neuroscience 135:
1203-1215 (2005).
Bogolyubov, N.N., Jr., Prykarpatsky, Y.A., Samoilenko, A.M., and
Prykarpatsky, A.K. Generalized de Rham-Hodge theory of
multidimensional Delsarte transmutations of differential operators and its
applications for nonlinear dynamic systems. Physics of Particles and
Nuclei 30 (Suppl. 1): S111-S122 (2005). BNL-75363-2006-JA.
Cheng, B., Glimm, J., Sharp, D.H., and Yu, Y. A multiphase flow model for the
unstable mixing of incompressible layered materials. Physics of Fluids 17:
0087102 (2005). LANL Preprint No. LA-UR-05-0078. Stony Brook University Preprint No.
SUNYSB-AMS-05-01.
Christie, M.A., Glimm, J., Grove, J.W., Higdon, D.M., Sharp, D.H., and
Wood-Schultz, M.M. Error analysis and simulations of complex
phenomena. Los Alamos Science 29: 2-25 (2005).
Du, J., Fix, B., Glimm, J., Jia, X. Li, X., Li, Y., and Wu, L. A simple
package for front tracking. J. Comp. Phys. 213: 613-628 (2005).
Stony Brook University Preprint No. SUNYSB-AMS-05-02.
Dutta, S., Glimm, J., and Zhang, Y. LES simulations of turbulent
combustion in a type Ia supernovae. Astrophysical J., submitted.
Stony Brook University Preprint No. SUNYSB-AMS-05-05.
Dutta, S., George, E., Glimm, J., Grove, J.W., Jin, H., Lee, T., Li,
X., Sharp, D.H., Ye, K., Yu, Y., Zhang, Y., and Zhao, M. Shock wave
interactions in spherical and perturbed spherical geometries. Nonlinear
Analysis - Theory Methods and Applications 63(5-7): 644-652 (2005). Stony Brook University
Preprint No. SB-AMS-04-09 and LANL Report No. LA-UR-04-2989. BNL-72334-2004-JA. PDF
Format.
Efstathiadis, E., et al. Status of the QCDOC project at BNL. International
Workshop on QCDOC and BlueGene, Edinburgh, UK, October 4-6, 2005.
Fang, B. and Deng, Y. Performance of 3D FFT on 6D QCDOC torus parallel
supercomputer. J. Comp. Phys. Submitted, 2005.
Fix, B., Glimm, J., Li, X., Li, Y., Liu, X., Samulyak, R., and Xu, Z.
A TSTT integrated FronTier cde and its applications in computational fluid
physics. J. Physics: Conf. Series 16: 471-475 (2005).
George, E. and Glimm, J.
Self similarity of Rayleigh-Taylor mixing rates. Physics of Fluids 17:
054101-1 - 054101-3 (2005). Stony Brook University Preprint No. SUNYSB-AMS-04-05.
BNL-74855-2005-JA.
George, E. Glimm, J., Li, X.L., Li, Y.H., and Liu, X.F. The influence of
surface tension on turbulent mixing rates of immiscible fluids. Phys. Rev.
Lett. Submitted, 2005. Stony Brook University preprint SUNYSB-AMS-05-11.
Glimm, J., Grove, J.W., Kang, Y., Lee, T., Li, X., Sharp, D.H., Yu,
Y., Ye, K., and Zhao, M. Errors in numerical solutions of spherically
symmetric shock physics problems. Contemporary Mathematics 371:
163-179 (2005). Stony
Brook University Preprint No. SUNYSB-AMS-04-03, LANL Report No. LA-UR-04-0713.
Glimm, J., Kim, M.-N., Li, X.-L., Samulyak, R., and Xu, Z. Jet
simulation in a diesel engine. In Computational
Fluid and Solid Mechanics 2005. Elsevier Science, 2005. ISBN: 0-08-044476-8.
Golenia, J., Prykarpatsky, A.K., and Prykarpatsky, Y.A. The structure
of Gelfand-Levitan-Marchenko type equations for Delsarte transmutation
operators of linear multi-dimensional differential operators and operator
pencils. Part 2. J. Nonlinear Mathematical Physics 12(3):
381-408 (2005). BNL-73976-2005-JA.
Hornak, V, Okur, A., Rizzo, R.C., and Simmerling, C. Flap structure and
dynamics in HIV-1 protease simulations. Proc. Natl. Acad. Sci. USA,
submitted, 2005.
Jin, H., Liu, X.F., Lu, T., Cheng, B., Glimm, J., and Sharp, D.H.
Rayleigh-Taylor mixing rates for compressible flows. Physics of
Fluids 17: 024104-1 - 024104-10 (2005).
Liu, J.-J., Glimm, J., and Li, X.L. A conservative front-tracking method. In
Proceedings of the Tenth International Conference on Hyperbolic Problems:
Theory, Numerics, and Applications, Yokohama Publishers, Osaka, Japan, in
press, 2005.
Lu, T., Samulyak, R., and Glimm, J. Direct numerical simulation of
bubbly flows and its application. J. Fluid Eng., submitted,
2005.
BNL-73502-2004-JA.
Rissland, P. and Deng, Y. Supercomputers and their effects on
molecular dynamics. IEEE Potentials: 9-12 (2005).
Rissland, P. and Deng, Y. All-gather on QCDOC. Parallel
Computing, submitted, 2005.
Ryne, R. et al. SciDAC advances and applications in computational beam
dynamics. J. Phys.: Conf. Series 16: 210-214 (2005).
Tomov, S., McGuigan, M., Bennett, R., Smith, G., and Spiletic, J.
Benchmarking and implementation of probability-based simulations on
programmable graphics cards. Computers and Graphics 29(1): 71-80 (2005).
BNL-73952-2005-JA.
Zhang, Y., Drake, P., Glimm, J., Grove, J., and Sharp, D.H. Radiation
coupled front tracking simulations for laser driven shock experiments.
J. Nonlinear Analysis 63: e1635 - e1644 (2005). LANL Report No. LA-UR-04-2381.
PDF Format.
Zhang, Y., Glimm, J., and Dutta, S. Tracked flame simulation for Type
Ia supernova. In Computational Fluid and Solid Mechanics, K.J. Bathe,
Ed., pp. 950-953. Elsevier, 2005.
Zheng, J-C., Zhu, Y., Wu, L., and Davenport, J. W. On the sensitivity of
electron- and x-ray-scattering factors to valence charge distributions. J. Appl.
Crystallography 38:
648-656, Part 4 (2005). BNL-74965-2005-JA.
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Last Modified: January 31, 2008
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Claire Lamberti
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