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Evolutionary
Perspectives on Protein Folding, Structure, and Thermodynamics
Proteins fold into their native-state conformations in milliseconds
to seconds, ignoring theoretical estimates that this process should
take many times the age of the universe. Much work is directed to understanding
how proteins are so much smarter than theorists, who cannot even reliably
predict what the final folded states will be. Proteins have one major
advantage over theorists - proteins have been working on this problem
for billions of years. We can consider different ways in which proteins
may have evolved to solve the protein-folding problem. Using simple
theoretical models, we can show how evolutionary considerations can
explain many of the observed properties of proteins such as the way
proteins fold, the distribution of observed protein structures, the
marginal stability of proteins, and how the evolutionary robustness
of protein structures co-exists with sequence plasticity.
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