Joint Computational Science Center/Structural Biology Seminar

"Atomic-detail Simulations of Biomolecular Systems: From Peptide Models to Protein Dynamics and Pharmaceutical Design"

Presented by Carlos Simmerling, Center for Structural Biology, Stony Brook University

Thursday, December 22, 2005, 11:00 am — John Dunn Seminar Room, Bldg. 463

One of the most important challenges for computational biophysics is the accurate prediction of biomolecular structure and dynamic behavior. The major obstacles to quantitative agreement with experiment are accuracy of the energy function and the relatively slow timescale of conformational changes. This seminar will provide an overview of these challenges, and highlight recent work in both areas by the Simmerling lab. In addition, a series of examples will illustrate how energy functions that have been trained on peptide models can be used for the study of much larger systems. These examples include studies of active site flap dynamics and drug binding in HIV-1 protease and modeling of new enzyme inhibitors for the treatment of tuberculosis.

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