X-ray Footprinting of Biological Materials

High ImpactVictoria S. Frisbie, Hideharu Hashimoto, Yixuan Xie, Francisca N. De Luna Vitorino, Josue Baeza, Tam Nguyen, Zhangerjiao Yuan, Janna Kiselar, Benjamin A. Garcia, Erik W. Debler, Two DOT1 enzymes cooperatively mediate efficient ubiquitin-independent histone H3 lysine 76 tri-methylation in kinetoplastids. Nat. Comm., 15(1), 2467 (2024). [doi: 10.1038/s41467-024-46637-6]

Rohit Jain, Nanak S. Dhillon, Vijaya Lakshmi Kanchustambham, David T. Lodowski, Erik R. Farquhar, Janna Kiselar, Mark R. Chance, Evaluating Mass Spectrometry-Based Hydroxyl Radical Protein Footprinting of a Benchtop Flash Oxidation System against a Synchrotron X-ray Beamline. J. Am. Soc. Mass Spectrom., 35(3), 476-486 (2024). [doi: 10.1021/jasms.3c00368]

Erik R. Farquhar, Kanchustambham Vijayalakshmi, Rohit Jain, Benlian Wang, Janna Kiselar, Mark R. Chance, Intact mass spectrometry screening to optimize hydroxyl radical dose for protein footprinting. Biochem. Biophys. Res. Commun., 671, 343-349 (2023). [doi: 10.1016/j.bbrc.2023.06.020]

Lenka Hromadkova, M. Khursheed Siddiqi, He Liu, Jiri G. Safar, Molecular Mechanisms Encoding Strains of Prions and Prion-Like Misfolded Proteins, p. 123-145, Springer International Publishing (2023). [doi: 10.1007/978-3-031-20565-1_7]

BW Martin, VE Fleischauer, E Muller, Simultaneous in-situ x-ray beam profile and intensity measurements with a minimally invasive pixelated diamond monitor. J Phys.: Conf. Ser., 2380(1), 012088 (2022). [doi: 10.1088/1742-6596/2380/1/012088]

Cited 7 timesIlana Mandel, Dana Haves Ziv, Ilana Goldshtein, Tsuri Peretz, Dror Alishekevitz, Anna Fridman Dror, Motti Hakim, Sharon Hashmueli, Itay Friedman, Yair Sapir, Rita Greco, Hongjing Qu, Frank Nestle, Dmitri Wiederschain, Lily Pao, Sharad Sharma, Tehila Ben Moshe, BND-22, a first-in-class humanized ILT2-blocking antibody, promotes antitumor immunity and tumor regression. J Immunother Cancer, 10(9), e004859 (2022). [doi: 10.1136/jitc-2022-004859]

Cited 1 timeMatthew Rosi, Brandon Russell, Line G. Kristensen, Erik R. Farquhar, Rohit Jain, Donald Abel, Michael Sullivan, Shawn M. Costello, Maria Agustina Dominguez-Martin, Yan Chen, Susan Marqusee, Christopher J. Petzold, Cheryl A. Kerfeld, Daniel P. DePonte, Farid Farahmand, Sayan Gupta, Corie Y. Ralston, An automated liquid jet for fluorescence dosimetry and microsecond radiolytic labeling of proteins. Commun Biol, 5(1), 866 (2022). [doi: 10.1038/s42003-022-03775-1]

Rebecca Chandler-Bostock, Richard J. Bingham, Sam Clark, Andrew J.P. Scott, Emma Wroblewski, Amy Barker, Simon J. White, Eric C. Dykeman, Carlos P. Mata, Jen Bohon, Erik Farquhar, Reidun Twarock, Peter G. Stockley, Genome-regulated Assembly of a ssRNA Virus May Also Prepare It for Infection. J. Mol. Biol., 434(20), 167797 (2022). [doi: 10.1016/j.jmb.2022.167797]

High ImpactCited 4 timesRohit Jain, Nanak S. Dhillon, Erik R. Farquhar, Benlian Wang, Xiaolin Li, Janna Kiselar, Mark R. Chance, Multiplex Chemical Labeling of Amino Acids for Protein Footprinting Structure Assessment. Anal. Chem., 94(27), 9819-9825 (2022). [doi: 10.1021/acs.analchem.2c01640]

Cited 1 timeNikesh Patel, Sam Clark, Eva U. Weiß, Carlos P. Mata, Jen Bohon, Erik R. Farquhar, Daniel P. Maskell, Neil A. Ranson, Reidun Twarock, Peter G. Stockley, In vitro functional analysis of gRNA sites regulating assembly of hepatitis B virus. Commun Biol, 4(1), 1407 (2021). [doi: 10.1038/s42003-021-02897-2]

Cited 5 timesRohit Jain, Donald Abel, Maksim Rakitin, Michael Sullivan, David T. Lodowski, Mark R. Chance, Erik R. Farquhar, New high-throughput endstation to accelerate the experimental optimization pipeline for synchrotron X-ray footprinting. J. Synch. Rad., 28(5), 1321-1332 (2021). [doi: 10.1107/S1600577521005026]

Cited 4 timesMohammad Khursheed Siddiqi, Chae Kim, Tracy Haldiman, Miroslava Kacirova, Benlian Wang, Jen Bohon, Mark R. Chance, Janna Kiselar, Jiri G. Safar, Structurally distinct external solvent-exposed domains drive replication of major human prions. Plos Pathog., 17(6), e1009642 (2021). [doi: 10.1371/journal.ppat.1009642]

High ImpactCited 32 timesStephan Tetter, Naohiro Terasaka, Angela Steinauer, Richard J. Bingham, Sam Clark, Andrew J. P. Scott, Nikesh Patel, Marc Leibundgut, Emma Wroblewski, Nenad Ban, Peter G. Stockley, Reidun Twarock, Donald Hilvert, Evolution of a virus-like architecture and packaging mechanism in a repurposed bacterial protein. Science, 372(6547), 1220-1224 (2021). [doi: 10.1126/science.abg2822]

Jakub Wlodek, Kazimierz Gofron, ADUVC - an EPICS Areadetector Driver for USB Video Class Devices, International Conference on Accelerator and Large Experimental Physics Control Systems (17th), p. 1492-1496, sponsored by BNL (2021). [doi: 10.18429/JACoW-ICALEPCS2019-WEPHA174]

Cited 4 timesHao Ruan, Janna Kiselar, Weilin Zhang, Siyang Li, Ruoyao Xiong, Ying Liu, Sichun Yang, Luhua Lai, Integrative structural modeling of a multidomain polo-like kinase. Phys. Chem. Chem. Phys., 22(47), 27581-27589 (2020). [doi: 10.1039/D0CP05030J]

Cited 1 timeD. P. Siddons, A. J. Kuczewski, A. K. Rumaiz, R. Tappero, M. Idir, K. Nakhoda, J. Khanfri, V. Singh, E. R. Farquhar, M. Sullivan, D. Abel, D. J. Brady, X. Yuan, A coded aperture microscope for X-ray fluorescence full-field imaging. J. Synch. Rad., 27(6), 1703-1706 (2020). [doi: 10.1107/S1600577520012308]

Oksana Ivashkevych, Matt Cowan, Leonid Flaks, Dennis Poshka, Thomas Smith, babyIOC - Control System in a Box Small Factor Solution, ICALEPCS2019, Vol 978, p. 1262 - 1263, sponsored by BNL (2020). [doi: 10.18429/JACoW-ICALEPCS2019-WEPHA069]

Qiuye Li, Structural Studies of Pathogenic Protein Aggregates, Thesis Thesis. Case Western Reserve University, Cleveland (2020).

Awuri Asuru, Applications of X-ray Hydroxyl Radical Protein Footprinting, Ph.D. Thesis Thesis. Case Western Reserve University, Cleveland (2020).

Cited 6 timesJohn Hill, Stuart Campbell, Gabriella Carini, Yu-Chen Karen Chen-Wiegart, Yong Chu, Andrei Fluerasu, Masafumi Fukuto, Mourad Idir, Jean Jakoncic, Ignace Jarrige, Peter Siddons, Toshi Tanabe, Kevin G Yager, Future trends in synchrotron science at NSLS-II. J. Phys.: Condens. Matter, 32(37), 374008 (2020). [doi: 10.1088/1361-648X/ab7b19]

Cited 18 timesMark R. Chance, Erik R. Farquhar, Sichun Yang, David T. Lodowski, Janna Kiselar, Protein Footprinting: Auxiliary Engine to Power the Structural Biology Revolution. J. Mol. Biol., 432(9), 2973-2984 (2020). [doi: 10.1016/j.jmb.2020.02.011]

Cited 5 timesMengnan Zou, Jen Bohon, John Smedley, James Distel, Kyle Schmitt, Ren-Yuan Zhu, Liyuan Zhang, Erik M. Muller, Proton radiation effects on carrier transport in diamond radiation detectors. AIP Adv., 10(2), 025004 (2020). [doi: 10.1063/1.5130768]

M Zou, Investigation of Diamond Radiation Detectors in Radiation Therapy Applications, Ph.D. Thesis. Stony Brook University, Stony Brook (2019).

Cited 14 timesA Asuru, E Farquhar, M Sullivan, D Abel, J Toomey, M Chance, J Bohon, The XFP (17-BM) beamline for X-ray footprinting at NSLS-II. J. Synch. Rad., 26, 1388-1399 (2019). [doi: 10.1107/S1600577519003576]

High ImpactCited 115 timesY Du, N Duc, S Rasmussen, D Hilger, X Kubiak, L Wang, J Bohon, H Kim, M Wegrecki, Assembly of a GPCR-G Protein Complex. Cell, 177, 1232-1242 (2019). [doi: 10.1016/j.cell.2019.04.022]

Cited 1 timeJ Bohon, Development of Synchrotron Footprinting at NSLS and NSLS-II . Protein Peptide Lett., 26(1), 55-60 (2019). [doi: 10.2174/0929866526666181128125125]

Cited 21 timesQ Li, F Wang, X Xiao, C Kim, J Bohon, J Kiselar, J Safar, J Ma, W Surewicz, Structural attributes of mammalian prion infectivity: Insights from studies with synthetic prions. J. Biol. Chem., 293, 18494-18503 (2018). [doi: 10.1074/jbc.RA118.005622]

Y Hao, J Bohon, R Hulscher, M Rappe, S Gupta, T Adilakshmi, S Woodson, Time‐resolved Hydroxyl Hadical Footprinting of RNA with X‐rays. Curr. Protoc. Nucleic Acid Chem., 73(1), e52 (2018). [doi: 10.1002/cpnc.52]

Cited 4 timesM Zou, M Gaowei, T Zhou, A Sumant, C Jaye, D Fisher, J Bohon, J Smedley, E Muller, An All-diamond X-ray Position and Flux Monitor Using Nitrogen-incorporated Ultra-nanocrystalline Diamond Contacts. J. Synch. Rad., 25(4), 1060-1067 (2018). [doi: 10.1107/S1600577518006318]

W Ding, Advanced Techniques for Design and Characterization of Front-End Circuits and Systems-on-Chip, Ph.D. Thesis. State University of New York at Stony Brook, Stony Brook (2017).

T Zhou, Diamond Radiation Detectors, Ph.D. Thesis. State University of New York at Stony Brook, Stony Brook (2017).